A DENOISING-GUIDED ENHANCEMENT PIPELINE FOR BRAIN MRI SEGMENTATION USING DEEP NEURAL NETWORKS

Authors:

Prem Nath,Naresh Kumar Trivedi,

DOI NO:

https://doi.org/10.26782/jmcms.2026.04.00003

Keywords:

Image Enhancement,Gibbs Ringing Artefact,Deep Learning,Medical Image Processing,

Abstract

Accurate segmentation of brain tumours from magnetic resonance imaging (MRI) depends critically on the quality and consistency of acquired scans; however, MRI data are often affected by artefacts, intensity inhomogeneity, and inter-scanner variability, which degrade the performance of deep learning–based models. To address this, the present study proposes a denoising-guided enhancement pipeline designed to improve anatomical and geometric consistency before segmentation. The preprocessing framework integrates Gibbs ringing artefact suppression, N4ITK bias field correction, Z-score–based intensity normalisation, adaptive histogram equalisation, along with spatial alignment and resolution standardisation, applied in an empirically optimised sequence across multimodal MRI inputs (T1, T1c, T2, FLAIR). Tumour segmentation is performed using an Attention Residual U-Net (ARU-Net), enabling improved feature localisation and boundary delineation. Experimental evaluation on BraTS 2015 and BraTS 2018 datasets demonstrates enhanced performance, achieving Dice scores of 0.93 for whole tumour, 0.85 for tumour core, and 0.74 for enhancing tumour. Ablation analysis confirms that both the inclusion and ordering of preprocessing steps significantly influence segmentation accuracy, while statistical validation using corrected resampled t-tests establishes the robustness and significance of the observed improvements. The proposed pipeline is modular, reproducible, and suitable for integration into clinical imaging workflows, where denoising-guided preprocessing ensures early removal of acquisition-related artefacts without compromising fine anatomical details.

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